commit 9f461dff95ea0ee65edef45b5fa4a426e653d1d0 parent e66174f6fb604bf16e83b93e0d1c2428592c9c33 Author: C. Beau Hilton <cbeauhilton@gmail.com> Date: Tue, 30 Jun 2020 12:29:04 -0500 memex update Diffstat:
48 files changed, 146 insertions(+), 10 deletions(-)
diff --git a/.tags b/.tags @@ -5,3 +5,4 @@ linux_setup time.md 1;" vimwiki:time\ttime rmarkdown doc_formatting.md 1;" vimwiki:doc_formatting\tdoc_formatting rmarkdown working_with_python.md 1;" vimwiki:working_with_python\tworking_with_python ssh SSH_in_git.md 1;" vimwiki:SSH_in_git\tSSH_in_git +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/.vimdir b/.vimdir @@ -2,3 +2,4 @@ silent! !git pull > /dev/null :e! autocmd! BufWritePost * silent! !git add .;git commit -m "vim autocommit" > /dev/null; git push > /dev/null& +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/.vimwiki_tags b/.vimwiki_tags @@ -14,3 +14,4 @@ rmarkdown doc_formatting.md 2;" vimwiki:doc_formatting\tdoc_formatting#doc_forma rmarkdown working_with_python.md 2;" vimwiki:working_with_python\tworking_with_python#working_with_python ssh SSH_in_git.md 2;" vimwiki:SSH_in_git\tSSH_in_git#ssh_in_git vimwiki vimwiki_in_git.md 2;" vimwiki:vimwiki_in_git\tvimwiki_in_git#vimwiki_in_git +Sat 02 May 2020 11:41:11 AM CDT diff --git a/dateadd.sh b/dateadd.sh @@ -0,0 +1,3 @@ +for i in $(find . *.md); do + echo $(date -r "$i") >> "$i" +done diff --git a/diary/2019-10-19.md b/diary/2019-10-19.md @@ -8,3 +8,4 @@ private Git repo, and when stuff is interesting enough to share then y/p the relevant parts). This is my first diary entry, btw. +Sun 19 Jan 2020 09:20:54 AM CST diff --git a/diary/2019-11-13.md b/diary/2019-11-13.md @@ -20,3 +20,4 @@ Probs a waste of time, but if I find anything cool it would be good to submit to (it's in Pittsburgh in 2020, but in April so Lori might just kill me...). +Sun 19 Jan 2020 09:20:54 AM CST diff --git a/diary/2020-01-19.md b/diary/2020-01-19.md @@ -22,3 +22,4 @@ - seems progressive: intellectual understanding/exposure to the idea, then hear as in "hearken", then sure knowledge from experience. - "hear" etymology, fun tidbit: 'Old English also had the excellent adjective hiersum "ready to hear, obedient," literally "hear-some" with suffix from handsome, etc.' https://www.etymonline.com/word/hear +Sun 19 Jan 2020 10:03:22 AM CST diff --git a/florilegium/commonplace_book.md b/florilegium/commonplace_book.md @@ -6,3 +6,4 @@ to the Medieval florilegium, or "gathering of flowers," which were scrapbooks of religious themes, and on around to Ryan Holiday's shoebox of 3x5 notecards, it is essentially a homemade thought bank from which to withdraw and deviously employ someone else's hard-earned insights. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/florilegium/deep_work_by_cal_newport.md b/florilegium/deep_work_by_cal_newport.md @@ -10,3 +10,4 @@ they do not tire like an arm or a leg. * Arnold Bennett, "How to Live on 24 Hours a Day, 1910" * p. 214 +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/florilegium/design_of_everyday_things_don_norman.md b/florilegium/design_of_everyday_things_don_norman.md @@ -12,3 +12,4 @@ People don't want to buy a quarter-inch drill. They want a quarter-inch hole! * pp. 33-34 * Theodore Levitt +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/florilegium/essentialism_greg_mckeown.md b/florilegium/essentialism_greg_mckeown.md @@ -6,3 +6,4 @@ declining from your main design to serve a turn here or there. * p.124 * Ralph Waldo Emerson +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/florilegium/finite_infinite_games_james_p_carse.md b/florilegium/finite_infinite_games_james_p_carse.md @@ -58,3 +58,4 @@ _Note_: Which Sufi(s) say this? Also, I frequently entertain the idea of not hanging my degree certificates on the wall of my office. --- +Tue 30 Jun 2020 10:50:01 AM CDT diff --git a/florilegium/lyrics.md b/florilegium/lyrics.md @@ -11,3 +11,5 @@ tomorrow never happens, man. It's all the same fucking day, man. * (Not really a lyric, more of a mid-song pontification). * Janis Joplin, "Ball and Chain" + +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/florilegium/misc.md b/florilegium/misc.md @@ -96,3 +96,4 @@ W. Beran Wolfe, Australian psychiatrist Sonja Lyubomirsky, psychologist --- +Tue 30 Jun 2020 10:18:38 AM CDT diff --git a/health/mistakes.md b/health/mistakes.md @@ -8,3 +8,4 @@ Blame and fix systems, and allow people to thrive. What are the limits of system thinking? Where is the boundary between personal responsibility and systemic responsibility? Does the "an explanation is not a justification" idea dovetail into this? +Tue 30 Jun 2020 10:35:46 AM CDT diff --git a/health/sleep.md b/health/sleep.md @@ -17,3 +17,4 @@ you were sleepy and the lecture gave you an opportunity to sleep - Melatonin - ideally, take 12h before desired waking time (take at 5pm if 5am wakeup is desired) +Tue 30 Jun 2020 10:09:21 AM CDT diff --git a/identity/professional-identity.md b/identity/professional-identity.md @@ -27,5 +27,7 @@ Regain purpose with self-care, meaningful problems, surround yourself with great colleagues. -/n + + [^cn3]: he didn't make these up, of course, and both Pink and Newport are popularizing large and deep academic fields +Tue 30 Jun 2020 10:55:14 AM CDT diff --git a/images/dl_ml_venn.jpg b/images/dl_ml_venn.jpg Binary files differ. diff --git a/index.md b/index.md @@ -3,20 +3,36 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one's memory. It's a cool idea. This is my memex. --- -## **identity** + +# medicine + +## tech + +- [telehealth-disparities](medicine/telehealth-disparities.md) + +## VA + +- [va-vs-vumc](medicine/va-vs-vumc.md) + +## bias + +- [mitchell-unconscious-bias](medicine/mitchell-unconscious-bias.md) + +--- + +# identity - [professional-identity](identity/professional-identity.md) --- -## **personal health** +# personal health - [sleep](health/sleep.md) - [mistakes](health/mistakes.md) --- -# **tech** - +# tech ## linux setup - [time](tech/time.md) @@ -51,7 +67,7 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one' --- -## **learn** +# learn - [anki](learn/anki.md) - [memory](learn/memory.md) @@ -71,7 +87,9 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one' ## doing science - [doing science](learn/doing_science.md) -## **teach** +--- + +# teach - [cognitive load](teach/cognitive_load.md) @@ -89,7 +107,9 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one' - [ed tech](teach/ed_tech.md) -## **florilegium** +--- + +# florilegium - [commonplace book](florilegium/commonplace_book.md) @@ -108,10 +128,14 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one' - [misc](florilegium/misc.md) -## **theo** +--- + +# theo - [desert fathers](theo/desert_fathers.md) +--- + ### links to check out - [attractive things work better](https://jnd.org/emotion_design_attractive_things_work_better/) - [future of design](https://jnd.org/the_future_of_design_when_you_come_to_a_fork_in_the_road_take_it/) @@ -124,4 +148,3 @@ Vannevar Bush coined the term "memex" for a system of extending or indexing one' - [unix 1972 docker](https://nickjanetakis.com/blog/run-the-first-edition-of-unix-1972-with-docker) - [hmi planning table](https://harvardmacy.org/index.php/hmi/who-is-buzzing-at-your-planning-table) - [tips med ed](https://journals.lww.com/academicmedicine/Fulltext/2018/12000/Going_Up__Tips_for_the_Medical_Educator_s.39.aspx) - diff --git a/learn/anki.md b/learn/anki.md @@ -3,3 +3,4 @@ # spaced repetition Wouldn't it be nice if I could tag some statement, run a sed command, output to a csv, and import into Anki? +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/learn/doing_science.md b/learn/doing_science.md @@ -11,3 +11,4 @@ Gladwell gives an example of WWII, spies vs. the "screwball division." Spies wen It seems like much of medical ML is this - we have SO MUCH data, but it hasn't been properly cleaned and analyzed. It's also often siloed and unavailable to the "screwball division." +Fri 24 Apr 2020 08:13:53 AM CDT diff --git a/learn/dr_rose_on_ai_in_healthcare.md b/learn/dr_rose_on_ai_in_healthcare.md @@ -8,3 +8,4 @@ In my opinion, in all healthcare-facing ML, explainability methods should be bak On the anthropomorphic relationships with computers, have you heard about https://en.wikipedia.org/wiki/ELIZA ? It was developed in the 60s at MIT, simple rules-based conversation "bot," and people developed deep personal connections, on a level equalling or exceeding the current relationships people are building with Alexa (I would argue exceeding, as the conversations were purposefully therapeutic and do not avoid sensitive subjects). Would be interested in thoughts on why, exactly, Google/Amazon/etc. are needed. We have clinician-scientists, PhD researchers, collaboration with other universities (e.g. CWRU has great comp-sci). We can do NLP, DL, whatever, on our own. Google would have some extra data on searches, all the stuff they can get from cookies, etc., phone data. Amazon would have similarly rich data. But we get into some of the same issues we've seen trying to use Facebook, Twitter, etc. - there's a huge selection bias with who uses those services, and, even if usage nears 100%, the type of usage will vary between pts by orders of magnitude. This could help increase predictive power, but how much? This is a whole different ballgame than simply using AWS or Google Cloud to store or even process data, which is also of questionable utility (we have some rockin' servers over at LRI, and they're buying more). +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/learn/memory.md b/learn/memory.md @@ -40,3 +40,4 @@ and maybe even to "think out loud" when they perform reasoning (which can be hard because perhaps they are, appropriately, mostly functioning on unconscious reflex that was build over time). +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/learn/olga_botvinnik.md b/learn/olga_botvinnik.md @@ -17,3 +17,4 @@ That would probably take care of a lot of the issues. Another [gem](https://nbviewer.jupyter.org/gist/olgabot/5357268) from Olga Botvinnik, using Tufte's ideas in MPL. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/learn/random_survival_forests.md b/learn/random_survival_forests.md @@ -12,3 +12,4 @@ at least one unique death at the terminal branching points. Sampling assumes independence and samples with replacement. Pull random samples of the same size by allowing duplicate entries (e.g. in row 1, "4" is used twice). +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/medicine/mitchell-unconscious-bias.md b/medicine/mitchell-unconscious-bias.md @@ -0,0 +1,18 @@ +# Kevin Mitchell on unconscious bias + +- started with intersectionality (he trained as a pharmacist, then physician, is a veteran, from Miami, a husband, a father, a black man, --also big Harry Potter fan) +- "Code Switching" + - switching language and behavior based on context + - learned from mother to purposefully code switch + - "don't be a stereotype..." (or statistic - non-grad, etc.) + - data - [Race, Ethnicity, and NIH Research Awards](https://science.sciencemag.org/content/333/6045/1015) "2011 Science Mag, Ginther et al. : if top-tier scores, funded equally well, but below upmost echelons people who were black or of Asian decent less likely to be funded + - [Racial Disparities in Pain Management of Children With Appendicitis in Emergency Departments](https://jamanetwork.com/journals/jamapediatrics/fullarticle/2441797) (JAMA, Goyal et al.) : children of color less likely to receive analgesia for severe pain + - Assimilative techniques: passing (concealing: appear as member of dominant group), temporary passing (projecting), covering (downplay salience) +- Consequences of code switching + - imposter syndrome, burden of duality, burnout + - gift and curse: street credibility vs professionalism; empathy vs sympathy; pt trust vs colleague comfort + +- other notes: + - look into race-based GFR, history and problems + +last updated: 2020-06-30 diff --git a/medicine/telehealth-disparities.md b/medicine/telehealth-disparities.md @@ -0,0 +1,26 @@ +# telehealth disparities + +Getting telehealth set up for providers and patients is difficult. +The providers have a rough enough time, +and there is a near-guarantee that someone is tech-savvy +enough to figure it out, +almost regardless of the complexity of the telehealth system. +Patients may not have the luxury of technological +expertise, or access to it. + +This makes solutions like Zoom's, +where pretty much any browser +can substitute for the app proper, +not only convenient, but also moral. + +Most people have smartphones now, +even the elderly and poor. +If they can get a link, +and that's enough to get them a telehealth visit, +they can get care. + +Also, should data be free in these situations? +Kind of how certain media providers had data waivers on certain carriers +(e.g. some music app's streaming data wouldn't count against your data usage). + +Tue 30 Jun 2020 11:44:13 AM CDT diff --git a/medicine/va-vs-vumc.md b/medicine/va-vs-vumc.md @@ -0,0 +1,22 @@ +# VA vs VUMC +(or other academic medical centers) + +At VUMC, the VA is right across a walkway (or vice versa). +Despite physical proximity, +the two institutions have vastly different backend structures. + +VA -> US Dept of Veterans Affairs + +VUMC -> TN Dept Health (but mostly self monitors) + +## residents vs hospitalist teams +VA: Residents do everything. +VU: Hospitalist teams do all the "less educational" stuff and take care of COVID-19 pts + + +## COVID-19 testing +VA: Cepheid Rapid Test in-house, Abbott m2000 (gold-standard for PCR-based COVID-19, sent to Lexinton, KY - will call if +) +VU: in-house PCR + +*both PCR-based, nasopharyngeal swabs, varying turn-around times +Tue 30 Jun 2020 11:54:57 AM CDT diff --git a/site/css_custom_fonts.md b/site/css_custom_fonts.md @@ -49,3 +49,4 @@ Some resources on `relayd(8)` and caching: - <https://parksdigital.com/httpd-and-relayd-on-openbsd.html> - <https://ifconfig.se/simple-web-stack.html> - <https://web.dev/uses-long-cache-ttl> +Sun 28 Jun 2020 06:36:52 AM CDT diff --git a/site/icon.md b/site/icon.md @@ -8,3 +8,4 @@ The Sara Soueidan website [here](https://www.sarasoueidan.com/blog/icon-fonts-to She also links to this, which explains [why SVG is winner winner](https://css-tricks.com/icon-fonts-vs-svg/). +Tue 23 Jun 2020 08:40:45 AM CDT diff --git a/teach/2018_job_roles_of_2025_educator.md b/teach/2018_job_roles_of_2025_educator.md @@ -34,3 +34,4 @@ - kind of ties much of the above together - know what the students need (has assessed the state), what content is already available, which technologies may or may not be useful to fill the gap. May or may not have coach and/or role model roles as well. - +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/teach/2018_learning_sci_immersive_vr.md b/teach/2018_learning_sci_immersive_vr.md @@ -22,3 +22,4 @@ # some thoughts - autotune - apples vs apples (brought up repeatedly by the authors) +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/teach/cognitive_load.md b/teach/cognitive_load.md @@ -16,3 +16,4 @@ Richard Mayer - 9 Strategies for cognitive load | Essential | Caused by complexity of material (unavoidable) | Manage | | Generative | Aimed at making sense of material, caused by learner's effort | Foster | +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/teach/ed_tech.md b/teach/ed_tech.md @@ -54,3 +54,4 @@ https://jnd.org/learning_from_the_success_of_computer_games/ > Technology is not the answer, but proper technology coupled with informed pedagogy, coupled with teachers that are coaches, guides and mentors, can lead the way. --- +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/teach/introducing_ml.md b/teach/introducing_ml.md @@ -11,3 +11,4 @@ Machine learning is an approach to  https://arxiv.org/pdf/1206.5538.pdf +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/teach/introducing_python.md b/teach/introducing_python.md @@ -17,3 +17,4 @@ access_token_secret = 'ENTER_YOUR_ACCESS_TOKEN' {PYLcdWuI7kgMsVqASIdGEDOD4bOhy28oxAZRA3RZpbEFc} (Access token secret) Read and write (Access level) +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/SSH_in_git.md b/tech/SSH_in_git.md @@ -7,3 +7,4 @@ I need to figure out how to make it automatically sign in to SSH-agent when I un I think I got it working with these instructions: https://unix.stackexchange.com/questions/339840/how-to-start-and-use-ssh-agent-as-systemd-service +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/blarbs.md b/tech/blarbs.md @@ -5,3 +5,4 @@ After a while I realized that there's really nothing super broken in LARBS as it There's also a bunch of stuff I will be removing (e.g. all the special character bindings in the .vimrc). I want to keep some of the rad things, like leader-c for compiling all the things, and the overall workflow and aesthetic, but take things apart, understand how they work, and optimize them for my own stuff (i.e. I do a lot of Python programming, and use Jekyll rather than Luke's minimalist wubsite thing). BTW, Serge Gainsbourg is a hoot. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/convert_many_pdfs_to_jpg.md b/tech/convert_many_pdfs_to_jpg.md @@ -4,3 +4,4 @@ for f in *.pdf; do convert -verbose -density 150 -trim "$f" -quality 100 -flatten -sharpen 0x1.0 "${f%pdf}jpg" ; done This gives pretty nice rendering of text and images, though it isn't perfect. It's the best solution I've found so far. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/convert_tex_table_to_csv.md b/tech/convert_tex_table_to_csv.md @@ -6,3 +6,4 @@ I copy the table into a new file, then convert the % symbols so detex doesn't get rid of them, then detex to get rid of the LaTeX markup, then convert the & into whichever delimiter you want (;, pipe, tab, etc.), then reconvert the percents back into symbols, and output to a .txt file. It's important to NOT use a csv if you are going to open in Excel, because it will assume commas are the delimiter. If you use a text file, it will ask you what you want the delimiter to be. The next step here would be to insert a special commented-out sequence before and after all the LaTeX tables so you can select that portion with a sed/grep/awk command and not have to make a new TeX file. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/doc_formatting.md b/tech/doc_formatting.md @@ -16,3 +16,4 @@ The easiest way to change the location of the references section is to add in th This will pull in the references section wherever you put the tag. Easy-peasy. I also love that RMD/MD accepts arbitrary pieces of html (though I do not know the limits of this approach). +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/latex_groff_pro_typographers.md b/tech/latex_groff_pro_typographers.md @@ -3,3 +3,4 @@ This article and the discussion below is one of the best examples of what the Internet is for: http://web.archive.org/web/20150417042513/http://typophile.com/node/43702 . The author asks why TeX and troff (etc.) haven't more traction outside of the sciences, and gets a discussion about the strengths and weaknesses of these software, and of WYSIWYG tools (a la InDesign). +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/ncmpcpp.md b/tech/ncmpcpp.md @@ -8,3 +8,4 @@ BTW, I really like that the ncmpcpp config file is also the manual, but it makes scrolling through it a bit tedious, so I'm plus/minus on that way of doing things. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/time.md b/tech/time.md @@ -6,3 +6,4 @@ I noticed at one point that some websites were getting angry that my time didn't It may also be useful here to note the NetworkManager dispatcher script found on https://wiki.archlinux.org/index.php/System_time#Update_timezone_every_time_NetworkManager_connects_to_a_network . It will automatically switch the timezone appropriately whenever you connect to a network. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/vimrc.md b/tech/vimrc.md @@ -39,3 +39,4 @@ Add the following into your .vimrc to get more sane orthographic highlighting: hi SpellRare ctermfg=green +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/vimwiki_in_git.md b/tech/vimwiki_in_git.md @@ -21,3 +21,4 @@ The tutorial found here is very good, and I used most of its steps, subbing in G I tried to put things into folders to make the directory cleaner, but that borked the compatibility with GitHub (it could probably be worked out, but...). It seems that the best way to keep this organized and compatible with GH is to keep the structure flat, then make the index.md collapsible and well organized visually. On GH, the "pages" page will be essentially useless, but accessing the index will show a pretty and well-organized page. If I decide to sidestep GH at some point, I could pretty easily go back to folders. EDIT: Using the .wiki style ended up being a pain, and the links in a normal GitHub repo work just fine. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/tech/working_with_python.md b/tech/working_with_python.md @@ -18,3 +18,4 @@ use_condaenv("lgb_shap") They work. Make sure to call `plt.tight_layout()` so the formatting is pretty. +Sun 17 Nov 2019 10:23:05 AM CST diff --git a/theo/desert_fathers.md b/theo/desert_fathers.md @@ -1,3 +1,4 @@ # On the individuality of worship A brother asked one of the elders: What good thing shall I do, and have life thereby? The old man replied: God alone knows what is good. However, I have heard it said that someone inquired of Father Abbot Nisteros the great,the friend of Abbot Anthony, asking: What good work shall I do? and that he replied: Not all works are alike. For Scripture says that Abraham was hospitable and God was with him. Elias loved solitary prayer, and God was with him. And David was humble, and God was with him. Therefore, whatever you see your soul to desire according to God, do that thing, and you shall keep your heart safe. +Tue 28 Jan 2020 12:15:59 PM CST
